Information for 2-AACAAAAAGGAACABA (Motif 3)

G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
Reverse Opposite:
G C A T T C G A C G A T A T C G A C G T C G A T A G T C A G T C G A C T A C G T G A C T A G C T A C G T C T A G A C G T A C G T
p-value:1e-72
log p-value:-1.671e+02
Information Content per bp:1.686
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif7.05%
Number of Background Sequences with motif23.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets53.3 +/- 20.0bp
Average Position of motif in Background45.9 +/- 37.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----AACAAAAAGGAACABA
AGTAAACAAAAAAGAACANN
 A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AACAAAAAGGAACABA
-----CCAGGAACAG-
 G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAAAGGAACABA
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAAAGGAACABA
ATAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACAAAAAGGAACABA
AACAAT----------
 G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AACAAAAAGGAACABA-----
-----CGAAGCACACAAAATA
 G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

TP63/MA0525.2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AACAAAAAGGAACABA--
AACATGTTGGGACATGTC
 G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A A C G T A C G T
C T G A C T G A A G T C C T G A G C A T A C T G G A C T G A C T T C A G A C T G C T A G C T G A A G T C C G T A G A C T A C T G G A C T G T A C

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AACAAAAAGGAACABA
NTTNAGAACAATTA--------
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AACAAAAAGGAACABA
GTAAACAAT----------
 A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AACAAAAAGGAACABA
AAAGTAAACAAAAATT------
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A T C G A C T G A T G C A C T G A C T A G A C T G G C T A C G T A A T G C G C T A A G C T C G T A
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T