Information for 12-TGGSARGTTKKMC (Motif 11)

A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
Reverse Opposite:
A C T G C A T G G T C A G T C A C G T A G T C A A G T C G A C T A C G T A T C G A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.828e+01
Information Content per bp:1.846
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.9 +/- 16.2bp
Average Position of motif in Background46.9 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGSARGTTKKMC
AAGGCAAGTGT---
 A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGSARGTTKKMC
TTGCCAAG------
 A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGSARGTTKKMC
TTGGCA--------
 A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGSARGTTKKMC
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TGGSARGTTKKMC
TATTATGGGATGGATAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGSARGTTKKMC
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGSARGTTKKMC
CSTGGGAAAD-----
 A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------TGGSARGTTKKMC
RGSMTBCTGGGAAAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGGSARGTTKKMC
GGTTGGCAT-------
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGSARGTTKKMC
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C T G A C T G A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T G T A C A G T C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C