Information for 11-SYTGGCAGATMCW (Motif 9)

A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
Reverse Opposite:
C G A T A C T G A C T G C G T A A C G T A G T C A C G T A C T G A G T C G T A C C G T A C T G A A T C G
p-value:1e-11
log p-value:-2.710e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.3 +/- 21.5bp
Average Position of motif in Background42.0 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:SYTGGCAGATMCW
CTTGGCAA-----
 A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:SYTGGCAGATMCW
-TTGGCA------
 A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:SYTGGCAGATMCW
NTTGGCANN----
 A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-SYTGGCAGATMCW
NNTTGGCANN----
 A C G T A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-SYTGGCAGATMCW
GGTTGGCAT-----
 A C G T A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:SYTGGCAGATMCW
--TGGCAGTTGN-
 A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--SYTGGCAGATMCW-
NTATTGACAGCTNNTT
 A C G T A C G T A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SYTGGCAGATMCW
-ATGCCAGACN--
 A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--SYTGGCAGATMCW-
NTATTGACAGGTNNTN
 A C G T A C G T A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--SYTGGCAGATMCW-
GTATTGACAGCTNNTT
 A C G T A C G T A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C G T G T A C G T A C C G T A A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T