Information for 5-TCCCTGGCAA (Motif 5)

C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A
Reverse Opposite:
G A C T C A G T C T A G T A G C G T A C G C T A C A T G C T A G C T A G G T C A
p-value:1e-14
log p-value:-3.418e+01
Information Content per bp:1.656
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif10.29%
Number of Background Sequences with motif1669.2
Percentage of Background Sequences with motif3.68%
Average Position of motif in Targets51.5 +/- 27.4bp
Average Position of motif in Background50.5 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TCCCTGGCAA
--CTTGGCAA
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCCCTGGCAA---
CAATCACTGGCAGAAT
 A C G T A C G T A C G T C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCCCTGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCCCTGGCAA
--GCTGTCAA
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCCCTGGCAA---
-SCCTAGCAACAG
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCCTGGCAA----
TACCATAGCAACGGT
 A C G T C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TCCCTGGCAA-
--NTTGGCANN
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCCCTGGCAA-----
TCCCAGMCRAGCCCC
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCCCTGGCAA
---TTGGCA-
 C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTGGCAA--
TTGCCATGGCAACN
 A C G T A C G T C A G T G A T C G A T C G T A C C G A T C A T G A T C G G A T C G T C A C T G A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C