Information for 2-RGNACABHVTGTWCYT (Motif 2)

C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
Reverse Opposite:
G C T A C T G A C T A G G C T A C T G A A G T C C G T A A T C G C G T A T A C G G C A T A C T G G C A T C G A T G A T C G A C T
p-value:1e-145
log p-value:-3.342e+02
Information Content per bp:1.562
Number of Target Sequences with motif195.0
Percentage of Target Sequences with motif26.07%
Number of Background Sequences with motif980.4
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets50.7 +/- 19.5bp
Average Position of motif in Background51.3 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RGNACABHVTGTWCYT
AGNACAGNCTGTTCTN
 C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RGNACABHVTGTWCYT
NAGNACANNNTGTNCT-
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-RGNACABHVTGTWCYT
VAGRACAKWCTGTYC--
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-RGNACABHVTGTWCYT
VAGRACAKNCTGTBC--
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:RGNACABHVTGTWCYT
-GAACADWATGTTCTT
 C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

NR3C1/MA0113.3/Jaspar

Match Rank:6
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABHVTGTWCYT
NGGAACATNATGTACCC
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

NR3C2/MA0727.1/Jaspar

Match Rank:7
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABHVTGTWCYT
GGGAACATTGTGTTCCC
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABHVTGTWCYT
NGGTACACNGTGTTCCC
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.66
Offset:8
Orientation:reverse strand
Alignment:RGNACABHVTGTWCYT--
--------CTGTTCCTGG
 C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Vdr/MA0693.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RGNACABHVTGTWCYT
GAGTTCATTGAGTTCA-
 A C G T C T G A C T A G G C T A C G T A A G T C C G T A A T G C G C A T T A G C G C A T A C T G A G C T C G A T G A T C G A C T C G A T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A A C G T