Information for 9-GCCAAGATCC (Motif 17)

A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
Reverse Opposite:
C A T G T A C G C G T A A G C T G A T C G A C T C A G T C A T G A T C G T G A C
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.679
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.22%
Number of Background Sequences with motif1443.6
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets45.2 +/- 24.0bp
Average Position of motif in Background51.8 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGATCC
TGCCAA-----
 A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATCC
CGTGCCAAG----
 A C G T A C G T A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATCC
GGTGCCAAGT---
 A C G T A C G T A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATCC
TTGCCAAG----
 A C G T A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATCC-----
TATTCAAGGTCATGCGA
 A C G T A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCAAGATCC
BTCAAGGTCA
 A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCAAGATCC
NTCAAGGTCA
 A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGATCC-
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCAAGATCC-----
GGCAAAAGTCCAATAA
 A C G T A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCAAGATCC--
-TCAAGGTCATA
 A C T G T A G C G T A C G T C A C T G A C T A G T C G A C G A T A T G C G A T C A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A