Information for 13-GCTGTGCCAGCCC (Motif 13)

T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
Reverse Opposite:
A C T G A C T G A C T G A G T C A C G T A C T G T A C G A G T C C G T A A T G C C G T A T A C G A T G C
p-value:1e-10
log p-value:-2.528e+01
Information Content per bp:1.780
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif79.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets47.4 +/- 24.9bp
Average Position of motif in Background50.9 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTGTGCCAGCCC---
ACTATGCCAACCTACC
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCTGTGCCAGCCC
---ATGCCAACC-
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCTGTGCCAGCCC
-AGGTGHCAGACA
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTGTGCCAGCCC
--VBTGWCAGCB-
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCTGTGCCAGCCC
---TTGCCAAG--
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTGTGCCAGCCC-
-AGGTGNCAGACAG
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCTGTGCCAGCCC
---ATGCCAGACN
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCTGTGCCAGCCC
---ATGCCCACC-
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCTGTGCCAGCCC
----TGTCANYT-
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTGTGCCAGCCC
-CTGTTCCTGG--
 T A C G A G T C C G A T A T C G A C G T A C T G A G T C A G T C G T C A A C T G G T A C A G T C G T A C
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T