Information for 5-TTGCCAAGGT (Motif 6)

G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T
Reverse Opposite:
G T C A G A T C G T A C A G C T C A G T C T A G T A C G G A T C G T C A C T G A
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.658
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.37%
Number of Background Sequences with motif757.2
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets48.3 +/- 22.3bp
Average Position of motif in Background48.4 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TTGCCAAGGT
TTGCCAAG--
 G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TTGCCAAGGT
GGTGCCAAGT-
 A C G T G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTGCCAAGGT
CGTGCCAAG--
 A C G T G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTGCCAAGGT-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTGCCAAGGT
-TGCCAA---
 G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAAGGT---
GTTGCCATGGNAAC
 A C G T G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TTGCCAAGGT--
--BTCAAGGTCA
 G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T A C G T
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTGCCAAGGT-------
TATTCAAGGTCATGCGA
 G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTGCCAAGGT--
--NTCAAGGTCA
 G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T A C G T
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TTGCCAAGGT-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T C T A G A T G C G A T C G T C A T C G A C A T G C T A G C A G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A