Information for 3-ATCAATATTT (Motif 3)

C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
Reverse Opposite:
C G T A G T C A G C T A A C G T G T C A A G C T C G A T A C T G C T G A G A C T
p-value:1e-14
log p-value:-3.255e+01
Information Content per bp:1.852
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif275.0
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets45.5 +/- 26.9bp
Average Position of motif in Background46.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---ATCAATATTT-
NNTNNCAATATTAG
 A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---ATCAATATTT-
NNTNNCAATATTAG
 A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATCAATATTT
ATGAATATTC
 C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATCAATATTT
DGATCRATAN--
 A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATCAATATTT---
ATGGTTCAATAATTTTG
 A C G T A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T A C G T A C G T A C G T
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATCAATATTT
HNRAATCAAT----
 A C G T A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ATCAATATTT
AAAAAATCGATAAT-
 A C G T A C G T A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATCAATATTT
---AATAATT
 C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

CUX1/MA0754.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATCAATATTT
TAATCGATAA--
 A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ATCAATATTT
AAAAAATCAATAAT-
 A C G T A C G T A C G T A C G T A C G T C T G A A G C T G T A C C G T A C T G A C A G T C G T A C G A T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T A C G T