Information for 10-GTDGATCTTGGCM (Motif 7)

T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C
Reverse Opposite:
C A T G A C T G G T A C A G T C C G T A C G T A C T A G G C T A A G C T A T G C G A T C C G T A A T G C
p-value:1e-9
log p-value:-2.224e+01
Information Content per bp:1.754
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 19.8bp
Average Position of motif in Background44.5 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GTDGATCTTGGCM
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:GTDGATCTTGGCM--
------NTTGGCANN
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:GTDGATCTTGGCM--
-----NNTTGGCANN
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.68
Offset:7
Orientation:forward strand
Alignment:GTDGATCTTGGCM
-------TTGGCA
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:GTDGATCTTGGCM-
------CTTGGCAA
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTDGATCTTGGCM--
ATTGGACTTTGACCCC
 A C G T T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTDGATCTTGGCM----
-TGGACTTTGNNCTNTG
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTDGATCTTGGCM
NNATTGGACTTTNGNN
 A C G T A C G T A C G T T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTDGATCTTGGCM
--TGACCTTGAV-
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTDGATCTTGGCM---
-TGGACTTTGNNCTCN
 T A C G A C G T C T A G A T C G C T G A C G A T A G T C C G A T A C G T A C T G A C T G A G T C G T A C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T