Information for 8-CTGGCAGAGC (Motif 6)

A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
Reverse Opposite:
A C T G T G A C A G C T T A G C C G A T A C T G G T A C A G T C C G T A T C A G
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.753
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.72%
Number of Background Sequences with motif240.1
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets49.1 +/- 24.6bp
Average Position of motif in Background54.1 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGAGC
CTTGGCAA---
 A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CTGGCAGAGC
TTGGCA----
 A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGAGC
NTTGGCANN--
 A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGAGC
NNTTGGCANN--
 A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGAGC
GGTTGGCAT---
 A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGAGC
VBTGWCAGCB-
 A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGAGC
ARNTGACA----
 A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGGCAGAGC
YTGWCADY--
 A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGAGC
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CTGGCAGAGC
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A T C G T C G A A C T G A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T