Information for 18-TGGGVWGCAAATT (Motif 19)

C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T
Reverse Opposite:
C G T A C G T A C G A T A C G T A C G T C A T G A G T C C G T A A G C T A G T C A G T C G T A C C G T A
p-value:1e-7
log p-value:-1.737e+01
Information Content per bp:1.737
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif42.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets63.7 +/- 26.3bp
Average Position of motif in Background45.4 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou2f3/MA0627.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGGGVWGCAAATT---
TTGTATGCAAATTAGA
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGGGVWGCAAATT---
TTGTATGCAAATTAGA
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGGVWGCAAATT---
TTGTATGCAAATTAGA
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGGVWGCAAATT
CATTGTTATGCAAAT-
 A C G T A C G T A C G T C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGGVWGCAAATT--
--ATATGCAAATNNN
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T
A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGGVWGCAAATT
--TTATGCAAAT-
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGGVWGCAAATT--
---TATGCWAATBAV
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGGVWGCAAATT--
---WATGCAAATGAG
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGGVWGCAAATT-
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGGGVWGCAAATT
--ATATGCAAAT-
 C G A T A C T G A C T G T A C G T C G A C G A T A C T G G T A C G T C A C G T A C G T A C G A T G C A T
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T