Information for 17-AGAYKCAMTGGAT (Motif 18)

C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T
Reverse Opposite:
G T C A A G C T G T A C A G T C C G T A A C G T A C G T A C T G G T C A C T G A A C G T A G T C C G A T
p-value:1e-7
log p-value:-1.780e+01
Information Content per bp:1.777
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.4 +/- 27.5bp
Average Position of motif in Background43.9 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAYKCAMTGGAT---
ACTATGAATGAATGAT
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAYKCAMTGGAT----
AATCGCACTGCATTCCG
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0005.1_Bbx_1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAYKCAMTGGAT--
TAATTCAATGAAGTG
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGAYKCAMTGGAT
-VRAACAATGG--
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGAYKCAMTGGAT-----
--NNNTATTGAATTGNNN
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGAYKCAMTGGAT-
YDGHTACAWTGTADC
 A C G T C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGAYKCAMTGGAT
--GAACAATGG--
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAYKCAMTGGAT-
TWGHWACAWTGTWDC
 A C G T C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGAYKCAMTGGAT--
ATAAACAATTAAACA
 C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGAYKCAMTGGAT-
CTCACACAATGGCGC
 A C G T C G T A C T A G G T C A G A C T A C G T A G T C C G T A G T C A C G A T A C T G C A T G C T G A C A G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C