Information for 16-TTAATGGCTTAAC (Motif 16)

A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
Reverse Opposite:
C A T G C G A T A C G T G C T A G C T A T C A G T G A C G T A C G T C A C G A T C G A T T C G A C T G A
p-value:1e-8
log p-value:-1.975e+01
Information Content per bp:1.662
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif380.4
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets58.4 +/- 26.9bp
Average Position of motif in Background49.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCTTAAC
GTTAATGGCC----
 A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ANNCATTAATTGCTNGN-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ANNCATTAATTGCTNGN-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTAATGGCTTAAC
NTAATKGTTT---
 A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ATTNNTTAATTGCTTGT-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ATTNNTTAATTGCTTGT-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ATTCNTTAATTGCTTGT-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T A C G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTTAAC
ATTCNTTAATTGCTTGT-
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGGCTTAAC
CCTTAATNGNTTTT-
 A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTAATGGCTTAAC
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A G C T A G C T C G T A G C T A A C G T C A T G A C T G A G T C C G A T C G A T T C G A C G T A G T A C
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T