Information for 9-CAGGATCCAATAGAAG (Motif 13)

A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C A C G T C T G A A C G T A C G T A C T G C A T G C G T A A C G T G A T C A G T C A C G T A T C G
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 22.5bp
Average Position of motif in Background62.7 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG---
---AACCCAATAAAATTCG
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG
------CCAATAAAAC
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG---
---CTACCAATAAAATTCT
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG
------CCAATAAAAA
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG
------CCAATAAAAA
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG
-----NCYAATAAAA-
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CAGGATCCAATAGAAG
-----CCYMATAAAA-
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG----
---AATGCAATAAAATTTAT
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGGATCCAATAGAAG
ANCAGGATGT--------
 A C G T A C G T A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGGATCCAATAGAAG
-MTGATGCAAT-----
 A T G C G T C A C T A G C A T G C G T A A C G T G A T C G T A C C G T A C G T A A G C T C G T A A C T G C G T A C G T A A C T G
A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T