Information for 8-GTTCTGGCAA (Motif 8)

A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
Reverse Opposite:
A G C T C G A T A C T G A T G C A G T C C G T A T C A G G C T A C T G A G T A C
p-value:1e-14
log p-value:-3.228e+01
Information Content per bp:1.857
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.8 +/- 23.3bp
Average Position of motif in Background42.1 +/- 38.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GTTCTGGCAA
--CTTGGCAA
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GTTCTGGCAA-
--NTTGGCANN
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTCTGGCAA
GGTCTGGCAT
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GTTCTGGCAA
---TTGGCA-
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

STAT3/MA0144.2/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTTCTGGCAA-
CTTCTGGGAAA
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C G T
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTTCTGGCAA-
-NNTTGGCANN
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTTCTGGCAA--
-TTCTTGGAAAN
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C G T A C G T
A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

STAT1/MA0137.3/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTTCTGGCAA-
TTTCCAGGAAA
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A A C G T
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTCTGGCAA
-TNNGGGCAG
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTTCTGGCAA
--GCTGTCAA
 A C T G A G C T C G A T A G T C A C G T A C T G A T C G A G T C C G T A C T G A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A