Information for 7-CTCATAAAAA (Motif 6)

A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
Reverse Opposite:
C A G T C A G T A C G T A C G T G C A T T C G A A C G T T A C G C G T A T A C G
p-value:1e-16
log p-value:-3.695e+01
Information Content per bp:1.849
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.28%
Number of Background Sequences with motif433.7
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets39.1 +/- 24.0bp
Average Position of motif in Background50.1 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAAA--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAAA
CCYMATAAAA-
 A C G T A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAA
NCYAATAAAA-
 A C G T A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAA
GCTCGTAAAAA
 A C G T A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
CCAATAAAAA
 A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAAA--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
GTCGTAAAAT
 A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
CCAATAAAAA
 A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
CCAATAAAAC
 A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAA
GTCATAAAAN
 A T G C A C G T A T G C C G T A A G C T C G T A C G T A C G T A G T C A G T C A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T