Information for 7-CTCATAAATC (Motif 9)

G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C
Reverse Opposite:
C T A G C G T A A C G T C G A T C G A T G T C A C G A T T C A G C G T A A C T G
p-value:1e-12
log p-value:-2.906e+01
Information Content per bp:1.839
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.22%
Number of Background Sequences with motif194.4
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets38.4 +/- 24.1bp
Average Position of motif in Background52.2 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAATC--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CTCATAAATC-
GCCATAAATCA
 G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAATC
CCYMATAAAA-
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC-
NGYCATAAAWCH
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC-
GGCCATAAATCA
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC
GCTCGTAAAAA
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC
NCYAATAAAA-
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAATC--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC--
GGCCATAAATCAC
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAATC-
GGCCATAAATCA
 A C G T G T A C A C G T A G T C C G T A A C G T C G T A C G T A C G T A G C A T G A T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A