Information for 5-CTCTGCCAAG (Motif 4)

G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
Reverse Opposite:
A T G C G A C T C G A T A C T G T A C G T A G C C G T A C A T G C G T A C T A G
p-value:1e-16
log p-value:-3.784e+01
Information Content per bp:1.678
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif923.3
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets54.6 +/- 27.6bp
Average Position of motif in Background49.2 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CTCTGCCAAG
--TTGCCAAG
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CTCTGCCAAG-
-GGTGCCAAGT
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:CTCTGCCAAG
---TGCCAA-
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTCTGCCAAG
-CGTGCCAAG
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTCTGCCAAG-
--ATGCCAACC
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCTGCCAAG-----
ACTATGCCAACCTACC
 A C G T G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCTGCCAAG
-GCTGTCAA-
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTCTGCCAAG---
---TGCCCAGNHW
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTCTGCCAAG
-RHTGWCAR-
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTCTGCCAAG
-CCTGTCAA-
 G A T C G C A T G T A C C G A T A T C G A T G C G T A C C G T A C T G A T A C G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T