Information for 3-TTTTATTGGC (Motif 3)

G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
Reverse Opposite:
C T A G A G T C G T A C G C T A C T G A A G C T G C T A C G T A G C T A C T G A
p-value:1e-23
log p-value:-5.518e+01
Information Content per bp:1.649
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif16.39%
Number of Background Sequences with motif2560.2
Percentage of Background Sequences with motif5.66%
Average Position of motif in Targets51.2 +/- 28.9bp
Average Position of motif in Background50.2 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
NTTTTATTGG-
 A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
TTTTTATTGG-
 A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
NTTTTATTGG-
 A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGC--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGC--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTTATTRGN
 G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGC
TTTTATKRGG
 G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTAATTGCN
 G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGC--
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTTATTGC-
 G A C T C A G T G C A T C G A T T C G A G A C T C G A T C A T G T C A G G A T C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T