Information for 20-TTAAGTTDATTAAGTT (Motif 27)

A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
Reverse Opposite:
C T G A G T C A A T G C G C A T C G A T C G T A C T G A A C G T G C T A G T C A G T C A A G T C A C G T G C A T G C T A C G T A
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.784
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.0 +/- 18.3bp
Average Position of motif in Background36.8 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0053.1_Hoxa6/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTDATTAAGTT
NTNAGGTAATTACCTT
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

PH0143.1_Pou2f1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTAAGTTDATTAAGTT
ATATATTAATTAAGTA
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A

PH0071.1_Hoxc6/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTDATTAAGTT-
NNTNATTAATTAATTTG
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T A C G T
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G

PH0149.1_Pou3f4/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTAAGTTDATTAAGTT
AATTAATTAATTAATTC
 A C G T A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0074.1_Hoxd1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTAAGTTDATTAAGTT--
-TAAACTAATTAGCTGTA
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T A C G T A C G T
A C G T C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTAAGTTDATTAAGTT
CTGAGCTAATTACCGT
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0049.1_Hoxa2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTDATTAAGTT
NTGAGCTAATTACCNT
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

PH0001.1_Alx3/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTDATTAAGTT-
NTNAGCTAATTAGTTNA
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

PH0146.1_Pou3f1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTAAGTTDATTAAGTT
AATTAATTAATTAATTC
 A C G T A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0052.1_Hoxa5/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTDATTAAGTT
NTGAGCTAATTACCNT
 A C G T C G A T C G T A C G T A C T A G A C G T A C G T C G A T C G T A A G C T A C G T C G T A C G T A A T C G A C G T A G C T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T