Information for 20-TGTGTACTTTGGC (Motif 24)

A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
Reverse Opposite:
A C T G T A G C G T A C C G T A C T G A C G T A C T A G A C G T C G T A A G T C C G T A A G T C C G T A
p-value:1e-8
log p-value:-1.867e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets26.0 +/- 12.1bp
Average Position of motif in Background28.7 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TGTGTACTTTGGC-
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTGTACTTTGGC
TGTTTACTTAGG-
 A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGTGTACTTTGGC
TGTTTACTTT---
 A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGTGTACTTTGGC
TGTTTACTTT---
 A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGTGTACTTTGGC
TCCATGTTTACTTTG--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGTGTACTTTGGC-----
--TGGACTTTGNNCTNTG
 A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTACTTTGGC--
NSTGTTTRCWCAGBNNN
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTACTTTGGC-
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGTGTACTTTGGC----
--TGGACTTTGNNCTCN
 A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTGTACTTTGGC
BSNTGTTTACWYWGN-
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T C G T A A G T C A C G T A G C T A C G T A C T G A T C G A G T C
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G A C G T