Information for 18-TGCAGGCTTAACT (Motif 21)

A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
Reverse Opposite:
C T G A A C T G A C G T A G C T G T C A C G T A C T A G A T G C A G T C A C G T A C T G A G T C C G T A
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 24.4bp
Average Position of motif in Background47.3 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCAGGCTTAACT-
TTCACGCATGAGTT
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGCAGGCTTAACT
--NGGGATTA---
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGCAGGCTTAACT
--VRGGATTARN-
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCAGGCTTAACT---
TAGAGGGATTAAATTTC
 A C G T A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGCAGGCTTAACT
---NGGATTAA--
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGCAGGCTTAACT
--CAAGCTT----
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGCAGGCTTAACT
----GGATTAGC-
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCAGGCTTAACT--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGCAGGCTTAACT
---GGGATTAA--
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGCAGGCTTAACT---
------GTTAACTAGN
 A C G T A C T G A G T C C G T A A C T G A T C G A G T C A C G T A C G T C T G A C G T A G T A C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T