Information for 15-CCACAATAAACTA (Motif 13)

A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
Reverse Opposite:
A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G C G A T A C T G A C T G
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 30.0bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCACAATAAACTA
--GCAATAAAA--
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCACAATAAACTA
--CCAATAAAAA-
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCACAATAAACTA
--CCAATAAAAC-
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CCACAATAAACTA--
----AATAAACAATN
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCACAATAAACTA
-NGYCATAAAWCH
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCACAATAAACTA---
AATGCAATAAAATTTAT
 A C G T A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCACAATAAACTA--
CTACCAATAAAATTCT
 A C G T A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCACAATAAACTA
--GTCATAAAAN-
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCACAATAAACTA
--CCAATAAAAA-
 A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACAATAAACTA--
AACCCAATAAAATTCG
 A C G T A G T C G T A C C G T A A G T C C G T A C G T A A C G T C G T A C G T A C G T A G T A C A G C T C G T A A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G