Information for 21-YCAAATATTT (Motif 47)

A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T
Reverse Opposite:
C T G A G C T A G C T A C A G T C G T A G C A T G C A T G C A T C T A G T C A G
p-value:1e-4
log p-value:-1.053e+01
Information Content per bp:1.504
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif324.9
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets50.9 +/- 24.2bp
Average Position of motif in Background50.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:YCAAATATTT
---AATAATT
 A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PH0149.1_Pou3f4/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---YCAAATATTT----
GANTTAATTAATTAANN
 A C G T A C G T A C G T A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--YCAAATATTT--
NNCNNAACAATTNT
 A C G T A C G T A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PH0146.1_Pou3f1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---YCAAATATTT----
NANTTAATTAATTANNN
 A C G T A C G T A C G T A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0142.1_Pou1f1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---YCAAATATTT----
GANTTAATTAATTANNN
 A C G T A C G T A C G T A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:YCAAATATTT--
--AAACMATTAN
 A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PH0028.1_En1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YCAAATATTT-----
GCGAACTAATTAATGC
 A C G T A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCAAATATTT-
-TAATCAATTA
 A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T
A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCAAATATTT-----
-CTAATATTGCTAAA
 A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCAAATATTT-----
-CTAATATTGCTAAA
 A G T C G A T C C G T A C G T A C G T A G C A T G T C A C G A T C G A T G A C T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A