Information for 20-TTGRTTGCTC (Motif 46)

A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C
Reverse Opposite:
A C T G C G T A A T C G G T A C G T C A G T C A G A T C G A T C G T C A T G C A
p-value:1e-5
log p-value:-1.166e+01
Information Content per bp:1.764
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif296.0
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets62.1 +/- 22.7bp
Average Position of motif in Background50.0 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-3.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PH0042.1_Hmx2/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC--
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGRTTGCTC-
TTTGATTGATGN
 A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTGRTTGCTC
TTGATTGN--
 A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTGRTTGCTC-
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGRTTGCTC
GTTAATGGCC-
 A C G T A C G T C A G T C T A G C T A G A C G T A C G T A C T G T A G C A C G T A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T