Information for 13-CTATAAAGSCCTT (Motif 22)

G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
Reverse Opposite:
C G T A T G C A C T A G A C T G A T G C G A T C A C G T A G C T A C G T C G T A A C G T C G T A C A T G
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.755
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets35.3 +/- 19.5bp
Average Position of motif in Background40.3 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTATAAAGSCCTT--
GTATAAAAGGCGGGG
 G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTATAAAGSCCTT--
GTATAAAAGGCGGGG
 G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CTATAAAGSCCTT
NGYCATAAAWCH---
 A C G T A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAGSCCTT
GCAATAAAA-----
 A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTATAAAGSCCTT
AAGCCATAAAA-----
 A C G T A C G T A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAGSCCTT
CCAATAAAAA----
 A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTATAAAGSCCTT
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAGSCCTT
CCAATAAAAC----
 A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTATAAAGSCCTT
NCYAATAAAA-----
 A C G T A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAGSCCTT
GTCATAAAAN----
 A C G T G T A C G C A T C G T A A C G T C G T A C T G A C G T A C A T G A T C G G T A C A G T C A C G T A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T