Information for 9-CCTGGCAAGGGCA (Motif 16)

A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C A G T C A T G C A C G T A C G T A T C G A G T C A G T C C G T A C T A G C T A G
p-value:1e-12
log p-value:-2.829e+01
Information Content per bp:1.855
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.5 +/- 20.9bp
Average Position of motif in Background37.8 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCTGGCAAGGGCA--
-----CAAGGHCANV
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAGGGCA
CTTGGCAA-----
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCAAGGGCA
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCAAGGGCA
TACCATAGCAACGGT-
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCAAGGGCA
SCCTAGCAACAG--
 A C G T A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCTGGCAAGGGCA
---BTCAAGGTCA
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTGGCAAGGGCA-
----TCAAGGTCAN
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CCTGGCAAGGGCA---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCTGGCAAGGGCA-
----TCAAGGTCAT
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCTGGCAAGGGCA
---NTCAAGGTCA
 A G T C A G T C A C G T C T A G A C T G A T G C C G T A C G T A A T C G C T A G A C T G A T G C C G T A
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A