Information for 8-CTCCTGCCAA (Motif 8)

G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A
Reverse Opposite:
A C G T A C G T A C T G A T C G A G T C G T C A C T A G T A C G C T G A C A T G
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.830
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif188.9
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets53.6 +/- 23.9bp
Average Position of motif in Background51.5 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CTCCTGCCAA--
--GGTGCCAAGT
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CTCCTGCCAA-
--CGTGCCAAG
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:CTCCTGCCAA
----TGCCAA
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CTCCTGCCAA-
---TTGCCAAG
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

E2F8/MA0865.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCCTGCCAA-
TTTCCCGCCAAA
 A C G T G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTCCTGCCAA
--GCTGTCAA
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTCCTGCCAA--
---ATGCCAACC
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

E2F7/MA0758.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGCCAA--
TTTTCCCGCCAAAA
 A C G T A C G T G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGCCAA-
TTTCCCGCCMAV
 A C G T G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A A C G T
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTCCTGCCAA
--CCTGTCAA
 G T A C A G C T A T G C G A T C C A G T A C T G A T G C G T A C C G T A T C G A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A