Information for 9-CAAGAAAAACCCC (Motif 7)

A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G C T A G A T C G A C G T A G C T C G A T A C G T A C G T A G T C A C G T A C G T A T C G
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.2 +/- 27.8bp
Average Position of motif in Background64.8 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAAGAAAAACCCC
---GGAAATCCCC
 A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CAAGAAAAACCCC
---GGAAANCCCC
 A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAAACCCC
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAAGAAAAACCCC
AAATAAGAAAAAAC--
 A C G T A C G T A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAAACCCC
AACCCAATAAAATTCG-
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAAGAAAAACCCC-
--GGGAAATCCCCN
 A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAGAAAAACCCC
CCAATAAAAC----
 A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAGAAAAACCCC
CCAATAAAAA----
 A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAAACCCC
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAGAAAAACCCC
CCAATAAAAA----
 A C G T A T G C C G T A C G T A A C T G C G T A C G T A C G T A C T G A C G T A A T G C A G T C A G T C A G T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T