Information for 8-TSTTTTATTGCMT (Motif 6)

A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G C T A G A G T C C G T A C G T A A C G T T C G A C G T A C G T A C G T A A T G C C G T A
p-value:1e-10
log p-value:-2.469e+01
Information Content per bp:1.919
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 19.6bp
Average Position of motif in Background37.3 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
--TTTTATGGCTN
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TSTTTTATTGCMT-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
--TTTTATTGC--
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
-NTTTTATTACN-
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
-NTTTTATGAC--
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
-TTTTTATTGC--
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TSTTTTATTGCMT--
NAATTTTATTACCNNN
 A C G T A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
-NTTTTATTGG--
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
-NTTTTATTGG--
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TSTTTTATTGCMT
--TTTAATTGCN-
 A C G T A T C G A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C T G A G T C G T A C A C G T
A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T