Information for 6-GCYTATAAAR (Motif 4)

A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A
Reverse Opposite:
G A C T C G A T A G C T C G A T C T G A A G C T C T G A C T A G C T A G T G A C
p-value:1e-15
log p-value:-3.597e+01
Information Content per bp:1.705
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif8.44%
Number of Background Sequences with motif1111.8
Percentage of Background Sequences with motif2.49%
Average Position of motif in Targets53.1 +/- 29.4bp
Average Position of motif in Background51.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GCYTATAAAR
CCYMATAAAA
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCYTATAAAR
NCYAATAAAA
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GCYTATAAAR-------
--GTATAAAAGGCGGGG
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GCYTATAAAR-------
--GTATAAAAGGCGGGG
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCYTATAAAR-
-CCAATAAAAA
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCYTATAAAR-
-CCAATAAAAC
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCYTATAAAR-
-CCAATAAAAA
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCYTATAAAR--
NGYCATAAAWCH
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GCYTATAAAR----
CTACCAATAAAATTCT
 A C G T A C G T A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCYTATAAAR
NGCAATTAAA
 A C T G A G T C G A T C A G C T C T G A A G C T G C T A C T G A C G T A C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A