Information for 6-CCAAGGTACA (Motif 8)

T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
Reverse Opposite:
C A G T A T C G C A G T G C T A G T A C G A T C G A C T A G C T C A T G A C T G
p-value:1e-13
log p-value:-3.079e+01
Information Content per bp:1.668
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif592.4
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets43.3 +/- 30.5bp
Average Position of motif in Background48.3 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CCAAGGTACA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCAAGGTACA-
-CCAGGAACAG
 T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGGTACA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAAGGTACA-
-CAAGGHCANV
 T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGGTACA----
TGCCAAAATAAACANN
 A C G T A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGTACA
BTCAAGGTCA-
 A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGTACA
NTCAAGGTCA-
 A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAAGGTACA----
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAAGGTACA----
GGCAAAAGTCCAATAA
 A C G T A C G T T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCAAGGTACA
TCAAGGTCAT
 T G A C G T A C T C G A C T G A C T A G C A T G C G A T G T C A T A G C G T C A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T