Information for 10-GAGATKTACT (Motif 13)

A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T
Reverse Opposite:
G T C A A C T G G C A T G T C A G T A C G T C A C G A T A G T C G A C T G T A C
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.660
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.14%
Number of Background Sequences with motif300.9
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets51.8 +/- 26.1bp
Average Position of motif in Background48.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGATKTACT
CNGTGATTTN--
 A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAGATKTACT
TGCTGTGATTT---
 A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GAGATKTACT--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGATKTACT
GCAGTGATTT---
 A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGATKTACT---
NTGATTTATGGCC
 A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGATKTACT--
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGATKTACT--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAGATKTACT---
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GAGATKTACT-
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAGATKTACT--
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T A G G C T A A C G T C A T G A C G T C G T A G T A C C A G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T