Information for 8-AYCTGATAAAAAT (Motif 11)

G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
Reverse Opposite:
C G T A G A C T G A C T G A C T A C G T G C A T G C T A G C A T A T G C C G T A A C T G C T A G C A G T
p-value:1e-10
log p-value:-2.348e+01
Information Content per bp:1.672
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif161.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets59.2 +/- 23.8bp
Average Position of motif in Background54.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AYCTGATAAAAAT-
AAAGCTCGTAAAATTT
 A C G T A C G T G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AYCTGATAAAAAT
-CCYMATAAAA--
 G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AYCTGATAAAAAT--
AACCCAATAAAATTCG
 A C G T G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AYCTGATAAAAAT-
AAACCTCGTAAAATTT
 A C G T A C G T G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AYCTGATAAAAAT
-NCYAATAAAA--
 G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AYCTGATAAAAAT
-GCTCGTAAAAA-
 G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AYCTGATAAAAAT
--CCAATAAAAA-
 G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AYCTGATAAAAAT--
TAAACTGATAAGAAGAT
 A C G T A C G T G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AYCTGATAAAAAT
--CCAATAAAAA-
 G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AYCTGATAAAAAT--
CTACCAATAAAATTCT
 A C G T G T C A A G T C G T A C C G A T A T C G C G T A C A G T C G T A T C G A C T G A C G T A C G T A G C A T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T