Information for 7-GTTTGCCTTGGCA (Motif 7)

C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C C G T A C G T A C T A G A T C G A T G C C G T A C G T A C G T A A G T C
p-value:1e-14
log p-value:-3.275e+01
Information Content per bp:1.896
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.3 +/- 24.6bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GTTTGCCTTGGCA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA--
-----NNTTGGCANN
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA---
--TTGCCATGGCAACC
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA---
--TTGCCATGGCAACN
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA-
------CTTGGCAA
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA--
------NTTGGCANN
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTTGCCTTGGCA--
CGGTTGCCATGGCAAC
 A C G T C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:7
Orientation:forward strand
Alignment:GTTTGCCTTGGCA
-------TTGGCA
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTGCCTTGGCA--
KGTTGCCATGGCAAC
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTTGCCTTGGCA---
CGTTGCCATGGCAACG
 C T A G A C G T A C G T A C G T A T C G A T G C A G T C A C G T A C G T C T A G C T A G A G T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G