Information for 6-CATAAATATTGAC (Motif 4)

G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
Reverse Opposite:
C T A G A G C T T A G C G T C A C G T A A G C T C G T A A C G T A C G T A C G T T C G A A C G T C A T G
p-value:1e-19
log p-value:-4.500e+01
Information Content per bp:1.805
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.6 +/- 26.2bp
Average Position of motif in Background65.6 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATATTGAC
CTCATGAATATTCAT
 A C G T A C G T G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATATTGAC
NNTNNCAATATTAG-
 A C G T A C G T G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATATTGAC
NNTNNCAATATTAG-
 A C G T A C G T G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CATAAATATTGAC
-ATGAATATTC--
 G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CATAAATATTGAC---
-----ATATTTACATA
 G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CATAAATATTGAC---
-----ATATTTACATA
 G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATAAATATTGAC--
YATGCATATRCATRT
 G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CATAAATATTGAC
AAATAAACA-----
 A C G T G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CATAAATATTGAC
GGCCATAAATCAC---
 A C G T A C G T A C G T G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATAAATATTGAC
-ATGMATATDC--
 G T A C G T C A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C T G C T G A A G T C
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T