Information for 6-ATAAATTACA (Motif 6)

T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
Reverse Opposite:
C G A T T A C G G C A T T G C A T C G A A G C T G C A T C G A T T C G A A G C T
p-value:1e-7
log p-value:-1.816e+01
Information Content per bp:1.648
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif1851.9
Percentage of Background Sequences with motif3.86%
Average Position of motif in Targets49.8 +/- 25.7bp
Average Position of motif in Background49.7 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTACA
GGCCATAAATCAC-
 A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

PH0038.1_Hlx/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----ATAAATTACA
CCATAATTAATTACA
 A C G T A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTACA
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATAAATTACA----
CGAATTAATTAAATACT
 A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A A C G T A C G T A C G T A C G T
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTACA---
GAAAATTAATTACTTCG
 A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATAAATTACA
TAATCAATTA--
 A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATAAATTACA
GCCATAAATCA--
 A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTACA
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

PH0101.1_Lmx1b/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATAAATTACA----
NNAATTAATTAAAAANN
 A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A A C G T A C G T A C G T A C G T
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTACA
NGYCATAAAWCH--
 A C G T A C G T A C G T A C G T T C G A A G C T G C T A C G T A T C G A A G C T A C G T C G T A A T G C G C T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T