Information for 5-GCCACAAGAG (Motif 4)

A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
Reverse Opposite:
G T A C A C G T A G T C C A G T A C G T A C T G C G A T A C T G C T A G A G T C
p-value:1e-30
log p-value:-7.118e+01
Information Content per bp:1.854
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.61%
Number of Background Sequences with motif85.4
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets55.1 +/- 32.0bp
Average Position of motif in Background54.4 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCCACAAGAG
GTCACATGAY
 A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAAGAG--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCACAAGAG-------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCACAAGAG
NWAACCACADNN-
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAAGAG
AAACCACAGAN-
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCACAAGAG
GGTCACATGAC
 A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

TFEC/MA0871.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCACAAGAG
ATCACGTGAC
 A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCACAAGAG----------
GCCASCAGGGGGCGCYVNNG
 A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCACAAGAG
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACAAGAG
TGCCAA-----
 A C G T A C T G A G T C A G T C C G T A G T A C G T C A G T C A A C T G G T C A A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T