Information for 1-HRAGGTCARV (Motif 1)

G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
Reverse Opposite:
A T C G A G T C A G C T T C A G T C G A G T A C G T A C G A C T G A C T C A G T
p-value:1e-85
log p-value:-1.965e+02
Information Content per bp:1.600
Number of Target Sequences with motif382.0
Percentage of Target Sequences with motif45.31%
Number of Background Sequences with motif7860.1
Percentage of Background Sequences with motif16.37%
Average Position of motif in Targets51.6 +/- 25.9bp
Average Position of motif in Background49.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:HRAGGTCARV
TRAGGTCA--
 G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:HRAGGTCARV
AGRGGTCA--
 G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.93
Offset:2
Orientation:forward strand
Alignment:HRAGGTCARV
--AGGTCA--
 G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.92
Offset:1
Orientation:forward strand
Alignment:HRAGGTCARV
-AAGGTCAC-
 G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-HRAGGTCARV--
CAAAGGTCAAGGG
 A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--HRAGGTCARV
ATCAAGGTCA--
 A C G T A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-HRAGGTCARV
TCAAGGTCAN-
 A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----HRAGGTCARV--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----HRAGGTCARV--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-HRAGGTCARV
CAAAGGTCAG-
 A C G T G T C A C T G A C T G A C A T G C A T G A G C T A G T C T C G A T C A G T A G C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T