Information for 3-ATGGATTAGGAGC (Motif 6)

G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
Reverse Opposite:
A C T G A G T C C G A T A G T C A G T C G C A T T G C A G C T A A C G T A G T C A T G C T G C A A C G T
p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.685
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif223.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets41.2 +/- 26.9bp
Average Position of motif in Background47.3 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
--GGATTAGC---
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
NNGGATTAGN---
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGGATTAGGAGC
TTGCCCGGATTAGG---
 A C G T A C G T A C G T A C G T G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
-------CGGAGC
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
-GGGATTANN---
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
VRGGATTARN---
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
GNGGATTAGN---
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGGATTAGGAGC
-GGGATTAA----
 G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATTAGGAGC
NTATCGATTA-----
 A C G T A C G T G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATTAGGAGC
TTATCGATTA-----
 A C G T A C G T G T C A A C G T A T C G C T A G C G T A C A G T A C G T C G T A C T A G A C T G C G T A C T A G T G A C
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T