Information for 5-TTGTGGCCAAGTT (Motif 4)

C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
Reverse Opposite:
T G C A C T G A A T G C A G C T A C G T A C T G A T C G A G T C G T A C C G T A T A G C C G T A C G T A
p-value:1e-23
log p-value:-5.464e+01
Information Content per bp:1.749
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 26.4bp
Average Position of motif in Background63.6 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTGTGGCCAAGTT
--CGTGCCAAG--
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTGTGGCCAAGTT
----TGCCAA---
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTGTGGCCAAGTT
-TNNGGGCAG---
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTGTGGCCAAGTT
---TTGCCAAG--
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTGTGGCCAAGTT
--GGTGCCAAGT-
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTGTGGCCAAGTT
---TGACCTARTT
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTGTGGCCAAGTT
---AGGCCTAG--
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTGTGGCCAAGTT-
---AAGGCAAGTGT
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TTGTGGCCAAGTT
-TRAGGTCA----
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTGTGGCCAAGTT---
--TTGACCTANTTATN
 C G A T A C G T A C T G C G A T A C T G C T A G A T G C A G T C G T C A C T G A A T C G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A