Information for 4-CACAGAGGRAGGWMKC (Motif 6)

A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
Reverse Opposite:
A C T G G T A C A C G T G C T A A G T C A G T C A C G T A G C T A G T C A T G C A C G T A G T C C G A T A C T G A C G T A C T G
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.880
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 25.2bp
Average Position of motif in Background59.9 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACAGAGGRAGGWMKC
CACAGCGGGGGGTC--
 A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGGRAGGWMKC
NCGCAGCGGGGGGTC--
 A C G T A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CACAGAGGRAGGWMKC
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGGRAGGWMKC
NCNCAGCGGGGGGTC--
 A C G T A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CACAGAGGRAGGWMKC
---AGAGGAA------
 A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGGRAGGWMKC
DCHCAGCAGGRGGCC--
 A C G T A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CACAGAGGRAGGWMKC
---AGAGGAAGTG---
 A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T

SPIC/MA0687.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACAGAGGRAGGWMKC
AAAAAGAGGAAGTA---
 A C G T A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACAGAGGRAGGWMKC
CACAGCAGGGGG----
 A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CACAGAGGRAGGWMKC
CACAGN----------
 A G T C C G T A A G T C C G T A A C T G C G T A A T C G C T A G C T G A C G T A A C T G A C T G C G A T T G A C A C T G A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T