Information for 3-GTVAAAGKACACT (Motif 4)

C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
Reverse Opposite:
C T G A A C T G A C G T A C T G C G A T T G A C G A T C A G C T A G C T G A C T A C T G C G T A G T A C
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.647
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif11.67%
Number of Background Sequences with motif154.2
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets46.1 +/- 24.7bp
Average Position of motif in Background45.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:GTVAAAGKACACT
----AAGGTCAC-
 C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTVAAAGKACACT--
TCTCAAAGGTCACCTG
 A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTVAAAGKACACT
--CAAAGGTCAG-
 C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTVAAAGKACACT--
GGCAAAAGTCCAATAA
 A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTVAAAGKACACT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GTVAAAGKACACT
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTVAAAGKACACT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTVAAAGKACACT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTVAAAGKACACT
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTVAAAGKACACT--
TCTCAAAGGTCACGAG
 A C G T C A T G G A C T T A G C C T G A T C G A C T G A C A T G A C T G G C T A A G T C G T C A A G T C G A C T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G