Information for 2-GGARAAARTTAAAACT (Motif 3)

C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
Reverse Opposite:
C G T A T C A G A C G T A C G T A G C T A C G T C G T A T G C A A G C T A C G T A G C T A G C T A G T C A G C T A G T C G T A C
p-value:1e-14
log p-value:-3.293e+01
Information Content per bp:1.720
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.9 +/- 23.5bp
Average Position of motif in Background39.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxd3/MA0041.1/Jaspar

Match Rank:1
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGARAAARTTAAAACT-
-----AAACAAACATTC
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGARAAARTTAAAACT
---GAAAMTGAAACT-
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
A C G T A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T A C G T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGARAAARTTAAAACT-
--GGAAANTGAAACTNA
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T A C G T
A C G T A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

PH0020.1_Dlx1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGARAAARTTAAAACT
CTGAGGTAATTAAT---
 A C G T C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGARAAARTTAAAACT
---GAAAGTGAAAGT-
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGARAAARTTAAAACT---
--TGATTGTTAACAGTTGG
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

PB0031.1_Hoxa3_1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGARAAARTTAAAACT
TGGAGGTAATTAAC---
 A C G T C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGARAAARTTAAAACT
----GCAATAAAAA--
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GGARAAARTTAAAACT
---GAAACTGAAACT-
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T
A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGARAAARTTAAAACT----
--GGAAAGCGAAACCAAAAC
 C A T G A C T G C T G A C T A G C T G A C T G A G T C A C T G A A C G T C G A T C G T A C T G A T G C A G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C