Information for 14-CAGGCATGAATGA (Motif 25)

A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A
Reverse Opposite:
C G A T G T A C C G T A A C G T A C G T A G T C C G T A A C G T A C T G A G T C G T A C A C G T A C T G
p-value:1e-6
log p-value:-1.600e+01
Information Content per bp:1.883
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.6 +/- 20.7bp
Average Position of motif in Background49.6 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCATGAATGA-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGGCATGAATGA-
ACTATGAATGAATGAT
 A C G T A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCATGAATGA
NNTNTCATGAATGT
 A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATGAATGA--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAGGCATGAATGA-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAGGCATGAATGA-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGGCATGAATGA
TTCACGCATGAGTT-
 A C G T A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATGAATGA
CCWGGAATGY----
 A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A
A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGGCATGAATGA----
NTTNTATGAATGTGNNC
 A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATGAATGA
CCWGGAATGY----
 A C G T A G T C C G T A A C T G A C T G G T A C C G T A A C G T A C T G G T C A G T C A A C G T A C T G G C T A
T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T