Information for 15-CATGCATGCA (Motif 38)

A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.693e+00
Information Content per bp:1.530
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif9.25%
Number of Background Sequences with motif2843.1
Percentage of Background Sequences with motif6.16%
Average Position of motif in Targets53.9 +/- 25.7bp
Average Position of motif in Background50.4 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CATGCATGCA--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATGCATGCA----
NNCATTCATTCATNNN
 A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CATGCATGCA
NNTNTCATGAATGT-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATGCATGCA-
-TBGCACGCAA
 A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATGCA----
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CATGCATGCA
AANTCATGCGTGAA
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATGCA
GHATATKCAT---
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CATGCATGCA----
NNNNTGAATTCANNNC
 A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CATGCATGCA--
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CATGCATGCA
----CACGCA
 A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A