Information for 4-GCAKTGTCCTGTSCAG (Motif 4)

A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A T C G C G T A T G A C G C T A A C T G A T C G C G T A A G T C C G T A G T C A C G A T A C T G A T G C
p-value:1e-13
log p-value:-3.203e+01
Information Content per bp:1.781
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.5 +/- 18.4bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
CCWTTGTYYB------
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
-CTTTGT---------
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
CCATTGTTTT------
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
YCTTTGTTCC------
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GCAKTGTCCTGTSCAG
AGGVNCCTTTGT---------
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCAKTGTCCTGTSCAG
NCCATTGTTC-------
 A C G T A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
CCATTGTTYB------
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCAKTGTCCTGTSCAG
NCCATTGTTY-------
 A C G T A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCAKTGTCCTGTSCAG
----TGACCTTTNCNT
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCAKTGTCCTGTSCAG
---CTGACCTTTG---
 A T C G A G T C G C T A A C G T A C G T A C T G C G A T T A G C A G T C C A G T A C T G A C G T A T G C A G T C C G T A A C T G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T