Information for 15-TGGVACCATCCCG (Motif 37)

C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G
Reverse Opposite:
A G T C C T A G A C T G A C T G C G T A C G A T A C T G A C T G A C G T A G T C A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 24.8bp
Average Position of motif in Background51.5 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGVACCATCCCG-
TGGCACCATGCCAA
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TGGVACCATCCCG--
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGVACCATCCCG
-GGGAATTTCC--
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGVACCATCCCG
NGGGGATTTCCC-
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGVACCATCCCG-----
-NNNTCCATCCCATAANN
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGVACCATCCCG-
CTTGGCANNNTGCCAA
 A C G T A C G T C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGGVACCATCCCG
-GGGAATTTCC--
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TGGVACCATCCCG--
-----ACATCCTGNT
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGGVACCATCCCG--
-----ACTTCCGGTT
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C G C A T C G A T A G T C A G T C A C T G A T C G G A C T A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGVACCATCCCG-
TGGCAGNCTGCCAG
 C G A T A C T G A C T G T A C G C G T A G T A C A G T C C G T A A C G T A G T C A G T C A G T C C T A G A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G