Information for 4-GAGAGGACAT (Motif 36)

A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
Reverse Opposite:
C T G A C G A T A T C G A G C T A G T C A G T C A G C T A T G C G A C T G T A C
p-value:1e-7
log p-value:-1.842e+01
Information Content per bp:1.837
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif150.1
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets60.3 +/- 21.7bp
Average Position of motif in Background54.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGAGGACAT
-TRAGGTCA-
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGAGGACAT
-AGRGGTCA-
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGAGGACAT
NACAGGAAAT
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAGAGGACAT
GGGAGGACNG
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAGAGGACAT----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAGAGGACAT
---AGGTCA-
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGAGGACAT-
-AGAGGAAGTG
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T A C G T
A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGAGGACAT---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

SPIB/MA0081.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGAGGACAT
-AGAGGAA--
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T
A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGAGGACAT--
NDCAGGAARTNN
 A C T G C T G A A T C G C T G A A C T G A C T G C T G A A T G C G C T A G A C T A C G T A C G T
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G